Fix the Codeception rules that are causing coverage to misreport.

codeception.yml

@@ -18,6 +18,7 @@ coverage:
   enabled: true
   include:
    - app/*
+   - src/*
   exclude:
    # Not used in application
    - src/AzuraCast/Radio/Frontend/ShoutCast2.php
@@ -25,11 +26,11 @@ coverage:
    # Used in application, but not used in tests
    - src/AzuraCast/Console/Command/*.php
    - src/Migration/*
-   - app/**/*.conf.sample.php
+   - app/config/*.conf.sample.php
    - app/locale/**/*
    - app/locale/*
    - app/templates/system/error_general.phtml
 
    # Used in application, but not detected properly by the coverage tool :(
-   - app/**/routes.conf.php
+   - app/bootstrap/routes.php
    - app/**/*.conf.php