ChangeLog:

2012-11-12  Christopher Faylor  <me.cygwin2012@cgf.cx>

	* Makefile.common: Revamp for new configury.  Add default compilation
	targets, include .E processing.  Add magic for allowing "CFLAGS" to
	control optimization options in "CXXFLAGS".
	* configure.cygwin: New include for Cygwin configure.in's.
	* acinclude.m4: Delete old definitions.  Implement AC_WINDOWS_HEADERS,
	AC_WINDOWS_LIBS, AC_CYGWIN_INCLUDES, target_builddir, winsup_srcdir.
	* aclocal.m4: Regenerate.
	* autogen.sh: New file.
	* ccwrap: New script.
	* c++wrap: New script.
	* config.guess: New script.
	* config.sub: New script.
	* configure: Regenerate.
	* configure.in: Eliminate LIB_AC_PROG_* calls in favor of standard.
	Delete ancient target test.
	* install-sh: New script.

cygserver/ChangeLog:
2012-11-12  Christopher Faylor  <me.cygwin2012@cgf.cx>

	* Makefile.in: Revamp for new configury.
	* configure.in: Revamp for new configury.
	* aclocal.m4: Regenerate.
	* configure: Ditto.
	* autogen.sh: New script.

cygwin/ChangeLog:
2012-11-22  Christopher Faylor  <me.cygwin2012@cgf.cx>

	* select.cc (select): Don't return -1 when we've timed out after
	looping.

2012-11-22  Christopher Faylor  <me.cygwin2012@cgf.cx>

	* Makefile.in: Revamp for new configury.
	(datarootdir): Add variable setting.
	(winver_stamp): Accommodate changes to mkvers.sh setting.
	(libc.a): Fix race when libm.a might not have been built yet.
	* configure.in: Revamp for new configury.
	* aclocal.m4: Regenerate.
	* configure: Ditto.
	* autogen.sh: New script.
	* mkvers.sh: Find include directives via CFLAGS and friends rather than
	assuming that w32api lives nearby.

utils/ChangeLog:
2012-11-12  Christopher Faylor  <me.cygwin2012@cgf.cx>

	* aclocal.m4: Regenerate.
	* configure: Ditto.
	* autogen.sh: New script.
	* configure.in: Revamp for new configury.
	* Makefile.in: Revamp for new configury.  Rename ALL_* to just *.
	Always use "VERBOSE" setting.
	(MINGW_CXX): Don't include CFLAGS in definition.
	(all): Define target first, before everything else so that it is the
	default.
	(ps.exe): Don't add useless -lcygwin.
	(ldh.exe): For consistency, add to existing MINGW_LDFLAGS rather than
	redefining them.
	(cygcheck.exe): Always include -lz for MINGW_LDFLAGS.  Don't try to
	figure out where to find it.
	(dumper.exe): Simplify check.  Assume libraries are installed rather
	than trying to retrieve from source tree.
	(install): Just use /bin/mkdir to create directories.
	(Makefile): Regenerate when standard dependencies change.
	* dump_setup.cc: Always include zlib.h.  Remove accommodations for it
	possibly not existing.
	* parse_pe.cc: Add define which allows building with installed
	binutils package.
	* dumper.cc: Ditto.

winsup/cygwin/mkvers.sh

@@ -1,7 +1,7 @@
 #!/bin/sh
 # mkvers.sh - Make version information for cygwin DLL
 #
-#   Copyright 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2010 Red Hat, Inc.
+#   Copyright 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2010, 2012 Red Hat, Inc.
 #
 # This file is part of Cygwin.
 #
@@ -14,9 +14,23 @@ exec 9> version.cc
 #
 # Arg 1 is the name of the version include file
 #
-incfile="$1"
-rcfile="$2"
-windres="$3"
+incfile="$1"; shift
+rcfile="$1"; shift
+windres="$1"; shift
+iflags=
+# Find header file locations
+while [ -n "$*" ]; do
+    case "$1" in
+	-I*)
+	    iflags="$iflags $1"
+	    ;;
+	-idirafter)
+	    shift
+	    iflags="$iflags -I$1"
+	    ;;
+    esac
+    shift
+done
 
 [ -r $incfile ] || {
     echo "**** Couldn't open file '$incfile'.  Aborting."
@@ -151,4 +165,4 @@ fi
 
 echo "Version $cygwin_ver"
 set -$- $builddate
-$windres --include-dir $dir/../w32api/include --include-dir $dir/include --define CYGWIN_BUILD_DATE="$1" --define CYGWIN_BUILD_TIME="$2" --define CYGWIN_VERSION='"'"$cygwin_ver"'"' $rcfile winver.o
+$windres $iflags --define CYGWIN_BUILD_DATE="$1" --define CYGWIN_BUILD_TIME="$2" --define CYGWIN_VERSION='"'"$cygwin_ver"'"' $rcfile winver.o